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• Borge, R; Lopez, J; Lumbreras, J; Narros, A; Rodriguez, E, 2010: Influence of boundary conditions on CMAQ simulations over the Iberian Peninsula. Atmos. Environ., 44(23), 2681-2681. doi: 10.1016/j.atmosenv.2010.04.044


• Callies, J., Bühler, O., & Ferrari, R. (2016). The dynamics of mesoscale winds in the upper troposphere and lower stratosphere. Journal of the Atmospheric Sciences. doi:10.1175/jas-d-16-0108.1


• Chen, D; Wang, Y; McElroy, MB; He, K; Yantosca, RM; Le Sager, P, 2009: Regional CO pollution and export in China simulated by the high-resolution nested-grid GEOS-Chem model. Atmos. Chem. Phys., 9(11), 3825-3825. doi: 10.5194/acp-9-3825-2009


• Cooper, O. R., Parrish, D. D., Stohl, A., Trainer, M., Nédélec, P., Thouret, V., ... Avery, M. A., 2010: Increasing springtime ozone mixing ratios in the free troposphere over western North America. Nature, 463(7279), 344-348, doi:10.1038/nature08708.


• Diao, M., Jensen, J. B., Pan, L. L., Homeyer, C. R., Honomichl, S., Bresch, J. F., & Bansemer, A. (2015). Distributions of ice supersaturation and ice crystals from airborne observations in relation to upper tropospheric dynamical boundaries. J. Geophys. Res. Atmos., 120(10), 5101-5121. doi:10.1002/2015jd023139


• Diao, M., Jumbam, L., Sheffield, J., Wood, E. F., & Zondlo, M. A. (2013). Validation of AIRS/AMSU-A water vapor and temperature data with in situ aircraft observations from the surface to UT/LS from 87°N-67°S. J. Geophys. Res. Atmos., 118(12), 6816–6836. doi:10.1002/jgrd.50483


• Diao, M., M. A. Zondlo, A. J. Heymsfield, S. P. Beaton, and D. C. Rogers (2013), Evolution of ice crystal regions on the microscale based on in situ observations, Geophys. Res. Lett., 40,3473-3478, doi: 10.1002/grl.50665.


• Diao, M., Zondlo, M. A., Heymsfield, A. J., Avallone, L. M., Paige, M. E., Beaton, S. P., Campos, T., and Rogers, D. C.: Cloud-scale ice-supersaturated regions spatially correlate with high water vapor heterogeneities, Atmos. Chem. Phys., 14, 2639-2656, doi: 10.5194/acp-14-2639-2014, 2014.


• Gettelman, A., P. Hoor, L. L. Pan, W. J. Randel, M. I. Hegglin, and T. Birner (2011), The Extratropical upper troposphere and lower stratosphere, Rev. Geophys., 49, RG3003, doi:10.1029/2011RG000355.


• Gisi, M; Hase, F; Dohe, S; Blumenstock, T, 2011: Camtracker: a new camera controlled high precision solar tracker system for FTIR-spectrometers. Atmos. Meas. Tech., 4(1), 47-47. doi: 10.5194/amt-4-47-2011


• He, J., Zhang, Y., Tilmes, S., Emmons, L., Lamarque, J.-F., Glotfelty, T., … Vitt, F. (2015). CESM/CAM5 improvement and application: comparison and evaluation of updated CB05_GE and MOZART-4 gas-phase mechanisms and associated impacts on global air quality and climate. Geosci. Model Dev., 8(12), 3999–4025. doi:10.5194/gmd-8-3999-2015


• Hogrefe, C; Hao, W; Zalewsky, EE; Ku, JY; Lynn, B; Rosenzweig, C; Schultz, MG; Rast, S; Newchurch, MJ; Wang, L; Kinney, PL; Sistla, G, 2011: An analysis of long-term regional-scale ozone simulations over the Northeastern United States: variability and trends. Atmos. Chem. Phys., 11(2), 567-567. doi: 10.5194/acp-11-567-2011


• Homeyer, C. R., Bowman, K. P., Pan, L. L., Zondlo, M. A., & Bresch, J. F. (2011). Convective injection into stratospheric intrusions. J. Geophys. Res., 116(D23), n/a–n/a. doi:10.1029/2011jd016724


• Homeyer, C. R., K. P. Bowman, and L. L. Pan (2010), Extratropical tropopause transition layer characteristics from high‐resolution sounding data, J. Geophys. Res., 115, D13108, doi:10.1029/2009JD013664.


• Homeyer, C.R., K. P. Bowman, L. L. Pan, E.L. Atlas, R.Gao, T.L. Campos, Dynamical and chemical characteristics of tropospheric intrusions observed during START08. . J. Geophys. Res, VOL. 116, D06111, 15 PP., 2011. doi:10.1029/2010JD015098


• Houweling, S; Aben, I; Breon, FM; Chevallier, F; Deutscher, N; Engelen, R; Gerbig, C; Griffith, D; Hungershoefer, K; Macatangay, R; Marshall, J; Notholt, J; Peters, W; Serrar, S, 2010: The importance of transport model uncertainties for the estimation of CO2 sources and sinks using satellite measurements. Atmos. Chem. Phys., 10(20), 9981-9981. doi: 10.5194/acp-10-9981-2010


• Konopka, P. and L. L. Pan (2012), On the mixing driven formation of the extratropical transition layer (ExTL), JGR-atmosphere.


• Krämer, M., Rolf, C., Spelten, N., Afchine, A., Fahey, D., Jensen, E., Khaykin, S., Kuhn, T., Lawson, P., Lykov, A., Pan, L. L., Riese, M., Rollins, A., Stroh, F., Thornberry, T., Wolf, V., Woods, S., Spichtinger, P., Quaas, J., and Sourdeval, O.: A microphysics guide to cirrus – Part 2: Climatologies of clouds and humidity from observations, Atmos. Chem. Phys., 20, 12569–12608, https://doi.org/10.5194/acp-20-12569-2020, 2020.


• Kunz, A., Pan, L. L., Konopka, P., Kinnison, D. E., & Tilmes, S. (2011). Chemical and dynamical discontinuity at the extratropical tropopause based on START08 and WACCM analyses. J. Geophys. Res., 116(D24), n/a–n/a. doi:10.1029/2011jd016686


• Lam, YF; Fu, JS, 2009: A novel downscaling technique for the linkage of global and regional air quality modeling. Atmos. Chem. Phys., 9(23), 9169-9169. doi: 10.5194/acp-9-9169-2009


• Luebke, A. E., Avallone, L. M., Schiller, C., Meyer, J., Rolf, C., & Krämer, M. (2013). Ice water content of Arctic, midlatitude, and tropical cirrus – Part 2: Extension of the database and new statistical analysis. Atmospheric Chemistry and Physics, 13(13), 6447–6459. doi:10.5194/acp-13-6447-2013


• Makar, PA; Gong, W; Mooney, C; Zhang, J; Davignon, D; Samaali, M; Moran, MD; He, H; Tarasick, DW; Sills, D; Chen, J, 2010: Dynamic adjustment of climatological ozone boundary conditions for air-quality forecasts. Atmos. Chem. Phys., 10(18), 8997-8997. doi: 10.5194/acp-10-8997-2010


• Manney, G. L., Hegglin, M. I., Daffer, W. H., Santee, M. L., Ray, E. A., Pawson, S., … Walker, K. A. (2011). Jet characterization in the upper troposphere/lower stratosphere (UTLS): applications to climatology and transport studies. Atmospheric Chemistry and Physics, 11(12), 6115–6137. doi:10.5194/acp-11-6115-2011


• Miller, S. M., Michalak, A. M., & Levi, P. J. (2014). Atmospheric inverse modeling with known physical bounds: an example from trace gas emissions. Geosci. Model Dev., 7(1), 303–315. doi:10.5194/gmd-7-303-2014


• Miller, S. M., S. C. Wofsy, A. M. Michalak, E. A. Kort, A. E. Andrews, S. C. Biraud, E. J. Dlugokencky, J. Eluszkiewicz, M. L. Fischer, G. Janssens-Maenhout, B. R. Miller, J. B. Miller, S. A. Montzka, T. Nehrkorn, and C. Sweeney: Anthropogenic emissions of methane in the United States, Proc. Nat. Acad. Sci., 110, 20018-20022, doi: 10.1073/pnas.1314392110, 2013.


• Pan, L. L., Bowman, K. P., Atlas, E. L., Wofsy, S. C., Zhang, F., Bresch, J. F., … Cooper, W. A. (2010). The Stratosphere–Troposphere Analyses of Regional Transport 2008 Experiment. Bulletin of the American Meteorological Society, 91(3), 327–342. doi:10.1175/2009bams2865.1


• Pan, L. L., E. L. Atlas, K. P. Bowman, The Stratosphere- Troposphere Analyses of Regional Transport 2008 (START08) Experiment, SPARC Newsletter 34 January 2010.


• Parrella, J. P., Chance, K., Salawitch, R. J., Canty, T., Dorf, M., & Pfeilsticker, K. (2013). New retrieval of BrO from SCIAMACHY limb: an estimate of the stratospheric bromine loading during April 2008. Atmospheric Measurement Techniques, 6(10), 2549–2561. doi:10.5194/amt-6-2549-2013


• Patnaude, R., and M. Diao, 2020: Aerosol indirect effects on cirrus clouds based on global aircraft observations. Geophysical Research Letters, 47, e2019GL086550, doi: 10.1029/2019GL086550.


• Patnaude, R., Diao, M., Liu, X., and Chu, S., 2021: Effects of thermodynamics, dynamics and aerosols on cirrus clouds based on in situ observations and NCAR CAM6, Atmos. Chem. Phys., 21, 1835–1859, doi: 10.5194/acp-21-1835-2021.


• Pay, MT; Piot, M; Jorba, O; Gasso, S; Goncalves, M; Basart, S; Dabdub, D; Jimenez-Guerrero, P; Baldasano, JM, 2010: A full year evaluation of the CALIOPE-EU air quality modeling system over Europe for 2004. Atmos. Environ., 44(27), 3322-3322. doi: 10.1016/j.atmosenv.2010.05.040


• Pierce, RB; Al-Saadi, J; Kittaka, C; Schaack, T; Lenzen, A; Bowman, K; Szykman, J; Soja, A; Ryerson, T; Thompson, AM; Bhartia, P; Morris, GA, 2009: Impacts of background ozone production on Houston and Dallas, Texas, air quality during the Second Texas Air Quality Study field mission. J. Geophys. Res.-Atmos., 114. doi: 10.1029/2008JD011337


• Pittman, J. V., L. L. Pan, J. C. Wei, F. W. Irion, X. Liu, E. S. Maddy, C. D. Barnet, K. Chance, and R. S. Gao (2009), Evaluation of AIRS, IASI, and OMI ozone profile Retrievals in the extratropical tropopause region using in situ aircraft measurements, J. Geophys. Res., 114, D24109, doi:10.1029/2009JD012493.


• Prather, MJ; Zhu, X; Tang, Q; Hsu, JN; Neu, JL, 2011: An atmospheric chemist in search of the tropopause. J. Geophys. Res.-Atmos., 116. doi: 10.1029/2010JD014939


• Salawitch, R. J., Canty, T., Kurosu, T., Chance, K., Liang, Q., da Silva, A., … Jacob, D. J. (2010). A new interpretation of total column BrO during Arctic spring. Geophysical Research Letters, 37(21), n/a–n/a. doi:10.1029/2010gl043798


• Schneider, M; Sepulveda, E; Garcia, O; Hase, F; Blumenstock, T, 2010: Remote sensing of water vapour profiles in the framework of the Total Carbon Column Observing Network (TCCON). Atmos. Meas. Tech., 3(6), 1785-1785. doi: 10.5194/amt-3-1785-2010


• Showstack, R., 2008: Climate change and the tropopause. Eos Trans. AGU, 89(27), 243–243, doi: 10.1029/2008EO270005.


• Siu, L. W., K. P. Bowman, and C. C. Epifanio 2015: Convective Transport of Trace Species Observed During the Stratosphere-Troposphere Analyses of Regional Transport 2008 Experiment (START08). J. Geophys. Res. Atmos., 120, doi: 10.1002/2015JD023645.


• Song, CK; Byun, DW; Pierce, RB; Alsaadi, JA; Schaack, TK; Vukovich, F, 2008: Downscale linkage of global model output for regional chemical transport modeling: Method and general performance. J. Geophys. Res.-Atmos., 113(D8). doi: 10.1029/2007JD008951


• Stephens, B. B., E. J. Morgan, J. D. Bent, R. F. Keeling, A. S. Watt, S. R. Shertz, and B. C. Daube, 2021: Airborne measurements of oxygen concentration from the surface to the lower stratosphere and pole to pole. Atmos. Meas. Tech.,14, 2543–2574, doi: 10.5194/amt-14-2543-202.


• Szopa, S; Foret, G; Menut, L; Cozic, A, 2009: Impact of large scale circulation on European summer surface ozone and consequences for modelling forecast. Atmos. Environ., 43(6), 1189-1189. doi: 10.1016/j.atmosenv.2008.10.039


• Tan, X., Y. Huang, M. Diao, A. Bansemer, M. A. Zondlo, J. P. DiGangi, R. Volkamer, and Y. Hu. An assessment of the radiative effects of ice supersaturation based on in situ observations, Geophysical Research Letter, 43, 11,039–11,047, doi:10.1002/2016GL071144, 2016.


• Tang, Q; Prather, MJ; Hsu, J, 2011: Stratosphere-troposphere exchange ozone flux related to deep convection. Geophys. Res. Lett., 38. doi: 10.1029/2010GL046039


• Tilmes, L.L. Pan, F. Hendrick, M. Van Roozendael, K. Kreher, P.V. Johnston, R. S. Gao, B. Johnson, T.P. Bui, G. Chen, R. B. Pierce, J. H. Crawford, and D. J. Jacob (2010), A New Interpretation of Total Column BrO during Arctic Spring, Geophys. Res. Lett., doi:10.1029/2010GL043798. Tilmes, S., L. L. Pan, P. Hoor, E. Atlas, M. A. Avery, T. Campos, L. E. Christensen, G. S. Diskin, R.-S. Gao, R. L. Herman, E. J. Hintsa, M. Loewenstein, J. Lopez, M. E. Paige, J. Pittman, J. R. Podolske, M. Proffitt, G. W. Sachse, N. Spelten, C. Webster, A. Weinheimer, E. M. Weinstock, M. A. Zondlo (2010), An aircraft based upper troposphere lower stratosphere O3, CO and H2O climatology for the Northern hemisphere, J. Geophys. Res.,115, D14303, doi:10.1029/2009JD012731


• Tilmes, S., Emmons, L. K., Law, K. S., Ancellet, G., Schlager, H., Paris, J.-D., … Panchenko, M. V. (2011). Source contributions to Northern Hemisphere CO and black carbon during spring and summer 2008 from POLARCAT and START08/preHIPPO observations and MOZART-4. Atmospheric Chemistry and Physics Discussions, 11(2), 5935–5983. doi:10.5194/acpd-11-5935-2011


• Vogel, B., L. Pan , P. Konopka , G. Guenther , R.Mueller , W. Hall , T. Campos , I. Pollack, A. J. Weinheimer , J. Wei , E. Atlas , K. Bowman Transport pathways and signatures of mixing in the extratropical tropopause region derived from Lagrangian model simulations. J. Geophys. Res., VOL. 116, D05306, 16 PP., 2011. doi:10.1029/2010JD014876.


• Wei, J. C., L. L. Pan, E. Maddy, J. V. Pittman, Murty Divakarla, X. Xiong, F. Sun, C. D. Barnet, 2010: Ozone profile retrieval from advanced Infrared sounder: Experiments with tropopause based climatology and optimal estimation approach, J. Atmos. Ocean Tech. 27, 1123-1139, doi: 10.1175/2010JTECHA1384.1


• Wunch, D., G. C. Toon, P. O. Wennberg, S. C. Wofsy, B. B. Stephens, et al., 2010: Calibration of the Total Carbon Column Observing Network using aircraft profile data. Atmos. Meas. Tech., 3, 1351-1362, doi: 10.5194/amt-3-1351-2010.


• Xiong, X., Barnet, C., Maddy, E., Wei, J., Liu, X., & Pagano, T. S. (2010). Seven Years’ Observation of Mid-Upper Tropospheric Methane from Atmospheric Infrared Sounder. Remote Sensing, 2(11), 2509–2530. doi:10.3390/rs2112509


• Zhang, F., Wei, J., Zhang, M., Bowman, K. P., Pan, L. L., Atlas, E., & Wofsy, S. C. (2015). Aircraft measurements of gravity waves in the upper troposphere and lower stratosphere during the START08 field experiment. Atmos. Chem. Phys., 15(13), 7667–7684. doi:10.5194/acp-15-7667-2015


• Zondlo, M.A., M.E. Paige, S.M. Massick, and J.A. Silver, “Development, flight performance, and calibrations of the NSF Gulfstream-V vertical cavity surface emitting laser (VCSEL) hygrometer”, J. Geophys. Res.-Atmospheres, 115, D20309, doi:10.1029/2010JD014445, 2010

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• Patnaude, R., 2020 (Adviser: M. Diao): Cirrus Cloud Microphysical Properties and Aerosol Indirect Effects using Airborne Observations and a Global Climate Model. M.S. thesis, 5107. Dept. of Meteorology and Climate Science, San Jose State University, 87 pp., https://scholarworks.sjsu.edu/etd_theses/5107.

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